oneadmin@one02:~$ onedb upgrade -v  -u opennebula -d  opennebula -p ************
Version read:
Shared tables 4.6.0 : OpenNebula 4.8.0 daemon bootstrap
Local tables  4.7.80 : OpenNebula 4.8.0 daemon bootstrap

MySQL dump stored in /var/lib/one/mysql_localhost_opennebula_2016-11-3_13:17:24.sql
Use 'onedb restore' or restore the DB using the mysql command:
mysql -u user -h server -P port db_name < backup_file


>>> Running migrators for shared tables
  > Running migrator /usr/lib/one/ruby/onedb/shared/4.6.0_to_4.11.80.rb
  > Done in 0.21s

  > Running migrator /usr/lib/one/ruby/onedb/shared/4.11.80_to_4.90.0.rb
  > Done in 0.25s

  > Running migrator /usr/lib/one/ruby/onedb/shared/4.90.0_to_5.2.0.rb
  > Done in 0.07s

Database migrated from 4.6.0 to 5.2.0 (OpenNebula 5.2.0) by onedb command.

>>> Running migrators for local tables
  > Running migrator /usr/lib/one/ruby/onedb/local/4.7.80_to_4.9.80.rb
  > Done in 0.48s

  > Running migrator /usr/lib/one/ruby/onedb/local/4.9.80_to_4.10.3.rb
  > Done in 0.03s

  > Running migrator /usr/lib/one/ruby/onedb/local/4.10.3_to_4.11.80.rb
  > Done in 1.01s

  > Running migrator /usr/lib/one/ruby/onedb/local/4.11.80_to_4.13.80.rb
**************************************************************
*  WARNING  WARNING WARNING WARNING WARNING WARNING WARNING  *
**************************************************************

OpenNebula 4.13.80 improves the management of FAILED VMs  
Please remove (onevm delete) any FAILED VM before continuing. 

**************************************************************
*  WARNING  WARNING WARNING WARNING WARNING WARNING WARNING  *
**************************************************************


The scheduler (and oned) has been update to enforce access    
rights on system datastores. This new version also checks that
the user can access the System DS.
This *may require* to update system DS rights of your cloud

Do you want to proceed ? [y/N]y

Mysql::Error: Duplicate entry '0' for key 'PRIMARY'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:175:in `query'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:175:in `block in _execute'
/usr/lib/ruby/vendor_ruby/sequel/database/logging.rb:33:in `log_yield'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:175:in `_execute'
/usr/lib/ruby/vendor_ruby/sequel/adapters/shared/mysql_prepared_statements.rb:34:in `block in execute'
/usr/lib/ruby/vendor_ruby/sequel/database/connecting.rb:250:in `block in synchronize'
/usr/lib/ruby/vendor_ruby/sequel/connection_pool/threaded.rb:91:in `hold'
/usr/lib/ruby/vendor_ruby/sequel/database/connecting.rb:250:in `synchronize'
/usr/lib/ruby/vendor_ruby/sequel/adapters/shared/mysql_prepared_statements.rb:34:in `execute'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:160:in `execute_insert'
/usr/lib/ruby/vendor_ruby/sequel/dataset/actions.rb:922:in `execute_insert'
/usr/lib/ruby/vendor_ruby/sequel/dataset/actions.rb:335:in `insert'
/usr/lib/one/ruby/onedb/local/4.11.80_to_4.13.80.rb:106:in `block (2 levels) in up'
/usr/lib/ruby/vendor_ruby/sequel/dataset/actions.rb:139:in `block in each'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:312:in `block (2 levels) in fetch_rows'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:367:in `yield_rows'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:312:in `block in fetch_rows'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:177:in `_execute'
/usr/lib/ruby/vendor_ruby/sequel/adapters/shared/mysql_prepared_statements.rb:34:in `block in execute'
/usr/lib/ruby/vendor_ruby/sequel/database/connecting.rb:250:in `block in synchronize'
/usr/lib/ruby/vendor_ruby/sequel/connection_pool/threaded.rb:91:in `hold'
/usr/lib/ruby/vendor_ruby/sequel/database/connecting.rb:250:in `synchronize'
/usr/lib/ruby/vendor_ruby/sequel/adapters/shared/mysql_prepared_statements.rb:34:in `execute'
/usr/lib/ruby/vendor_ruby/sequel/dataset/actions.rb:906:in `execute'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:351:in `execute'
/usr/lib/ruby/vendor_ruby/sequel/adapters/mysql.rb:296:in `fetch_rows'
/usr/lib/ruby/vendor_ruby/sequel/dataset/actions.rb:139:in `each'
/usr/lib/ruby/vendor_ruby/sequel/database/dataset.rb:46:in `fetch'
/usr/lib/one/ruby/onedb/local/4.11.80_to_4.13.80.rb:101:in `block in up'
/usr/lib/ruby/vendor_ruby/sequel/database/transactions.rb:126:in `_transaction'
/usr/lib/ruby/vendor_ruby/sequel/database/transactions.rb:100:in `block in transaction'
/usr/lib/ruby/vendor_ruby/sequel/database/connecting.rb:250:in `block in synchronize'
/usr/lib/ruby/vendor_ruby/sequel/connection_pool/threaded.rb:104:in `hold'
/usr/lib/ruby/vendor_ruby/sequel/database/connecting.rb:250:in `synchronize'
/usr/lib/ruby/vendor_ruby/sequel/database/transactions.rb:89:in `transaction'
/usr/lib/one/ruby/onedb/local/4.11.80_to_4.13.80.rb:99:in `up'
/usr/lib/one/ruby/onedb/onedb.rb:232:in `apply_migrators'
/usr/lib/one/ruby/onedb/onedb.rb:179:in `upgrade'
/usr/bin/onedb:313:in `block (2 levels) in <main>'
/usr/lib/one/ruby/cli/command_parser.rb:449:in `call'
/usr/lib/one/ruby/cli/command_parser.rb:449:in `run'
/usr/lib/one/ruby/cli/command_parser.rb:76:in `initialize'
/usr/bin/onedb:222:in `new'
/usr/bin/onedb:222:in `<main>'


The database will be restored

MySQL DB opennebula at localhost restored.
oneadmin@one02:~$